Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc29content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc29
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549619
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGTAATGTCACGTTAA-1, CGTTATTTCGCTAGTG-1, CATAGTCAGTAAGGGC-1, ATTTGCAAGGTTACGT-1, TATGGTCAGTTCCCGT-1 (top 5 of 487844 values)
count int

count
HISTOGRAM FOR count [1, 22]

Fragments

not computed

Files

Filename Size md5
GSM8549619_hc29_atac_fragments.tsv.gz 1.12 GB 468c8bdf6d397218ccc0cd6b0a3f2bee
GSM8549619_hc29_atac_fragments.tsv.gz.tbi 819.05 KB e037df6c40eb6f81f98e0f903b20e51e
GSM8549619_hc29_atac_fragments.tsv.gz.tbi.gz 818.26 KB b72e07074201d1826c5b944214142e73
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB a5019a6278467d255a4deba914e0ca4a
statistics/