Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc35content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc35
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549653
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GTTCATTTCTTAATGG-1, TGATCAATCGAAGTGA-1, TCCCGGACACCTATAG-1, CAGGGTGAGGAAGTAT-1, AGGATGCAGCAGGTTT-1 (top 5 of 531711 values)
count int

count
HISTOGRAM FOR count [1, 54]

Fragments

not computed

Files

Filename Size md5
GSM8549653_hc35_atac_fragments.tsv.gz 1.89 GB fa5da32b1ad73bf75903c89638888c61
GSM8549653_hc35_atac_fragments.tsv.gz.tbi 1023.23 KB fcd06004d306fa1e5a025d8c1ceb960e
GSM8549653_hc35_atac_fragments.tsv.gz.tbi.gz 1020.41 KB ee38dadef2aa2fcddd339e6869d0133d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB e4fe1ddd2d63b8ad1942465d27ea4913
statistics/