Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc40content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc40
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549651
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCTGTGCAGTAAGTA-1, CGAACCGGTTAGCGTA-1, GCGCCTTGTTGAAGCC-1, ATGATGACATTGTCCT-1, GTGTTCCTCGAGCAAA-1 (top 5 of 611852 values)
count int

count
HISTOGRAM FOR count [1, 17]

Fragments

not computed

Files

Filename Size md5
GSM8549651_hc40_atac_fragments.tsv.gz 2.31 GB be602eabf563250201f3efa66f766003
GSM8549651_hc40_atac_fragments.tsv.gz.tbi 1.2 MB c3395fb4ecca49e5232f81eef2bf3812
GSM8549651_hc40_atac_fragments.tsv.gz.tbi.gz 1.2 MB b910a3716f213bf3a42ac5b92c1153a3
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 83de0bfd40408b32aa54708c9c2a315c
statistics/