Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc4781content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc4781
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549630
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACCCAACCAATCCCTT-1, CAAGGCTGTCCAAGAC-1, GATGCTTAGGACTAAG-1, TCCGGTTTCATGTCAA-1, GAAGGCTAGGAGGCAT-1 (top 5 of 642972 values)
count int

count
HISTOGRAM FOR count [1, 23]

Fragments

not computed

Files

Filename Size md5
GSM8549630_hc4781_atac_fragments.tsv.gz 1.96 GB d0e658a0d8aa867f392c97d5ce584b4b
GSM8549630_hc4781_atac_fragments.tsv.gz.tbi 1.04 MB fdf99c634a62f7ac546d2a65be99b99f
GSM8549630_hc4781_atac_fragments.tsv.gz.tbi.gz 1.04 MB b58d1aa261a772c0093edc251f568fdc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB c10765bcdda4eb774f92eae707a37bc5
statistics/