Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5021content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5021
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549627
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACCCAACCACATTGCA-1, CCAACATAGCCTCTCG-1, AACTAGTGTCATTGTC-1, GACTAATGTGAGCAAG-1, CCGGTTAAGCTGTCAG-1 (top 5 of 558575 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549627_hc5021_atac_fragments.tsv.gz 1.47 GB 39c0879197273806eed1d654bd6c3954
GSM8549627_hc5021_atac_fragments.tsv.gz.tbi 913.96 KB 9196c76fd0b49fe64d32d49eec4e3ee0
GSM8549627_hc5021_atac_fragments.tsv.gz.tbi.gz 912.74 KB 025354e1d14b42cb00273783512aa3de
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 0740211510c0b6c4a8ee74c7f861bfb1
statistics/