Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5087content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5087
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549628
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGCTCCATCAAACTCA-1, AGGGTTGCAGAACCGA-1, GCGAGTGAGTAAGTGG-1, GGGCAATAGCAAGACA-1, TCTCGCCCATCCCTCA-1 (top 5 of 637842 values)
count int

count
HISTOGRAM FOR count [1, 26]

Fragments

not computed

Files

Filename Size md5
GSM8549628_hc5087_atac_fragments.tsv.gz 2.56 GB dc3e57dd2016cb8e64dbae7af58c0eb5
GSM8549628_hc5087_atac_fragments.tsv.gz.tbi 1.22 MB 40e84aa63a03de7fedb693a63f967ccc
GSM8549628_hc5087_atac_fragments.tsv.gz.tbi.gz 1.22 MB 42e2e723e958eec94c93741fb9a5d024
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 333d0f2bc5f48f4ea18e99e812983017
statistics/