Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5551content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5551
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549633
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TAGCATATCGGCCAGT-1, CCGCACACACGAATCC-1, CAAGCTAGTGGGTACT-1, GGCCAACTCCGCCTCA-1, TGGACTAGTGAACAAA-1 (top 5 of 678354 values)
count int

count
HISTOGRAM FOR count [1, 29]

Fragments

not computed

Files

Filename Size md5
GSM8549633_hc5551_atac_fragments.tsv.gz 3.48 GB 65c8259f783bb4122d359a4d75976052
GSM8549633_hc5551_atac_fragments.tsv.gz.tbi 1.43 MB bb046ec044a2abfd2d7ead07f7218c8a
GSM8549633_hc5551_atac_fragments.tsv.gz.tbi.gz 1.43 MB 05b5f0db3f6acaf916f71e1a0f7e4f86
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 2a92d697a0aa0a4bbf558bb940cc8b2e
statistics/