Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5579content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5579
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549617
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell AAGTAGCCATTGTCCT-1, GCTAAGCGTCAAAGGG-1, CCAAGTTAGGGTGAAC-1, GGGTGAAGTCATGAGC-1, GTTTGTAAGGAAGTAT-1 (top 5 of 582034 values)
count int

count
HISTOGRAM FOR count [1, 28]

Fragments

not computed

Files

Filename Size md5
GSM8549617_hc5579_atac_fragments.tsv.gz 3.08 GB 00a9e92d3427f7d8fa6e19257bde3d12
GSM8549617_hc5579_atac_fragments.tsv.gz.tbi 1.32 MB a9a39da785cf199464cd0a7806788b49
GSM8549617_hc5579_atac_fragments.tsv.gz.tbi.gz 1.32 MB 09b4d98393cfa334295b36e36b00cb81
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 8768b23fe7661d0bc0d767b3a05c2f2c
statistics/