Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5610content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5610
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549632
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATCATCAAGCACTAGT-1, GGCTTAAGTGGATGTC-1, AGCTACGTCTCACATT-1, TCAGCCTTCGCACAAT-1, TGTTATGAGCAAGGGT-1 (top 5 of 671419 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549632_hc5610_atac_fragments.tsv.gz 1.87 GB ca8f1e0e3aed1824be15deb0a76e0e4c
GSM8549632_hc5610_atac_fragments.tsv.gz.tbi 1.0 MB 3543c6a69c9947f98c2f1016d3bd8de9
GSM8549632_hc5610_atac_fragments.tsv.gz.tbi.gz 1.0 MB 575873aa25c74c81c072db82737353a8
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 305bfc4b9c493bd6c48d9d90091b709c
statistics/