Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc5614content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc5614
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549621
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GACATAGAGCTGGCTA-1, GCCCGTTGTTTGCAGA-1, TTAACTGAGTAACCCG-1, CGCTAATAGGTAGCTT-1, ACAGCGCTCACTAATG-1 (top 5 of 555273 values)
count int

count
HISTOGRAM FOR count [1, 13]

Fragments

not computed

Files

Filename Size md5
GSM8549621_hc5614_atac_fragments.tsv.gz 2.44 GB 483edfe67ee32261a72fe17a29b64cb1
GSM8549621_hc5614_atac_fragments.tsv.gz.tbi 1.19 MB db0de36dcbf23e58978b856f38c66a12
GSM8549621_hc5614_atac_fragments.tsv.gz.tbi.gz 1.19 MB d98b6e0256cecb3625747b52fa110a5c
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB a8c15ddbf66c585c3f00236d8807c893
statistics/