Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc6021content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc6021
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549634
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACGTACCCAACACCTA-1, CACTTTGTCCCATAAA-1, TGGTTCTGTGACCTGG-1, CTGTACCTCGACAAAG-1, TTGTCCATCACAGACT-1 (top 5 of 633594 values)
count int

count
HISTOGRAM FOR count [1, 43]

Fragments

not computed

Files

Filename Size md5
GSM8549634_hc6021_atac_fragments.tsv.gz 2.79 GB fada033a5d705d915c947eaba095b81c
GSM8549634_hc6021_atac_fragments.tsv.gz.tbi 1.24 MB 80db5b7260793fd3cba40adc271bef98
GSM8549634_hc6021_atac_fragments.tsv.gz.tbi.gz 1.24 MB 31ac6104fe11e35be915233a98cc2304
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 7579862288a989d8ea5c18637eb7179c
statistics/