Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc6052content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc6052
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549620
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGGCCATAGTAGCGCC-1, AATTAGCGTGTGTCCC-1, GGCCAACTCGAGGTGG-1, AGTGTGGCAATTGAGA-1, CTTATTGGTGTTTGAG-1 (top 5 of 427329 values)
count int

count
HISTOGRAM FOR count [1, 17]

Fragments

not computed

Files

Filename Size md5
GSM8549620_hc6052_atac_fragments.tsv.gz 922.76 MB 9174ec00a0fafd0ecb1b089e569024db
GSM8549620_hc6052_atac_fragments.tsv.gz.tbi 742.02 KB 27fc3c6dee60c45ce36b729aa153b86c
GSM8549620_hc6052_atac_fragments.tsv.gz.tbi.gz 738.52 KB 2292b059e11960faf0c63e39b9bc36bb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 7b0595fe17f0ceb058d71362359ff755
statistics/