Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc69984content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc69984
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549643
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GAAAGCCAGTCAGTAC-1, TATGCATCATTATGGT-1, CCGCAAATCGCATTAA-1, TGAGGAGGTCAGGCCA-1, GCTAATATCAAAGGCA-1 (top 5 of 543472 values)
count int

count
HISTOGRAM FOR count [1, 96]

Fragments

not computed

Files

Filename Size md5
GSM8549643_hc69984_atac_fragments.tsv.gz 917.04 MB 0fb3ea7b95d67dd443abb447a348ba3e
GSM8549643_hc69984_atac_fragments.tsv.gz.tbi 736.25 KB ac2e5afd08baa419423edc1fc20efe5a
GSM8549643_hc69984_atac_fragments.tsv.gz.tbi.gz 734.97 KB 26dac8d76189a9952a018a235d112ed6
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB b75e65bcca24cde3eaa9baf3f7fcb797
statistics/