Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc73content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc73
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549648
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATATGCTCAAGCGAGC-1, TTTGTTGGTCACCAAA-1, CTCCAAACAGGCTAGA-1, GGCTAGACAGCTCAAC-1, TAGTAGGAGCTGTCAG-1 (top 5 of 682095 values)
count int

count
HISTOGRAM FOR count [1, 113]

Fragments

not computed

Files

Filename Size md5
GSM8549648_hc73_atac_fragments.tsv.gz 5.05 GB 18d67563b6d8ef8d26eda433582bf58c
GSM8549648_hc73_atac_fragments.tsv.gz.tbi 1.65 MB 7ff25e86acdc1e1e305c948bae119afc
GSM8549648_hc73_atac_fragments.tsv.gz.tbi.gz 1.65 MB 79589914a8c2c96d566043d078499fa7
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 717ebed12bbaa1558a04a6fd50248838
statistics/