Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc73787content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc73787
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549636
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGAAGCAAGGCTACTG-1, TTACGTTTCAAGTGAG-1, ATATGTCCAGATTCAT-1, GTGCTCAAGCACTAAC-1, GCAAGTGCAGGAACTG-1 (top 5 of 635607 values)
count int

count
HISTOGRAM FOR count [1, 60]

Fragments

not computed

Files

Filename Size md5
GSM8549636_hc73787_atac_fragments.tsv.gz 2.82 GB 9130b72ac9cf4b2d66ed7b4532dcf9d5
GSM8549636_hc73787_atac_fragments.tsv.gz.tbi 1.29 MB c0daad61c6848e0f92a8e01ec3d0252c
GSM8549636_hc73787_atac_fragments.tsv.gz.tbi.gz 1.28 MB bd1fc616124216c94dde852cee512d2a
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB d53dcbb936006f11defd9d101b9053a4
statistics/