Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc76content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc76
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549618
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CCCAAACCAAATGCCC-1, GCGCTTAAGTAAGTCC-1, TTCAGGTAGAAGGTGC-1, CATAGTCAGGAGGCAT-1, GCTGTGATCATTTGTC-1 (top 5 of 520072 values)
count int

count
HISTOGRAM FOR count [1, 23]

Fragments

not computed

Files

Filename Size md5
GSM8549618_hc76_atac_fragments.tsv.gz 1.3 GB b40be6f487ff090354fd1bd67b15ba75
GSM8549618_hc76_atac_fragments.tsv.gz.tbi 864.26 KB 5a358a220b9e7481b204d128baa60d07
GSM8549618_hc76_atac_fragments.tsv.gz.tbi.gz 863.86 KB c4f2f5c8541d6594d6fb453b8643708d
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 9299c6b785f0f725116b83e4f52f7ff0
statistics/