Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc77content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc77
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549615
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GCCAATTAGTAGCGGG-1, ACTAACGGTTGCACGG-1, GTTCGCGCACAACAGG-1, CGATGTCCAAGCGAGC-1, AGGTCTTAGACAGGCG-1 (top 5 of 481090 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549615_hc77_atac_fragments.tsv.gz 1.22 GB 11c4259cf1fff96d5a41da07952b5798
GSM8549615_hc77_atac_fragments.tsv.gz.tbi 844.32 KB 7db00d5356f2ec08dd85b9fd340dd14e
GSM8549615_hc77_atac_fragments.tsv.gz.tbi.gz 843.6 KB d45b9184bc5e68997cfdf5e4d1b1d9cf
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 2efc25217dd91eb1078ca3d62fd96290
statistics/