Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc78content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc78
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549616
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GGTACCGGTTAACGGC-1, CAGGACACAGTTAAAG-1, TGCTCCGTCCTAAATG-1, GCCAGGTTCATGCAAC-1, TATGACATCTCTAGCC-1 (top 5 of 574421 values)
count int

count
HISTOGRAM FOR count [1, 19]

Fragments

not computed

Files

Filename Size md5
GSM8549616_hc78_atac_fragments.tsv.gz 1.95 GB d867d5e0d25e2990ede03b1261786487
GSM8549616_hc78_atac_fragments.tsv.gz.tbi 1.12 MB ca394c82c360afea8df07a85dce38576
GSM8549616_hc78_atac_fragments.tsv.gz.tbi.gz 1.12 MB dd3301517b5efa0d04ec4bf1f181fb62
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 370a3561c4ab4e25bd22a7e0cd00208b
statistics/