Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc8content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc8
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549639
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TTGTGCGAGCTGAGGG-1, ATTACGTCAAGCTTAT-1, TAGACCAGTGCTCCGT-1, GCTTAGTAGTAACGGA-1, ATTGGTTCACATAGCC-1 (top 5 of 680074 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549639_hc8_atac_fragments.tsv.gz 5.56 GB 9f061bf0f2936ad4a6b8592e740d53a6
GSM8549639_hc8_atac_fragments.tsv.gz.tbi 1.69 MB f61828d54c4ae312c77464effd88b145
GSM8549639_hc8_atac_fragments.tsv.gz.tbi.gz 1.7 MB f0ff4e8b6d8a8ce07f978f9e97cdad5b
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB f8794dbf23ffbc939ff87311dce117e7
statistics/