Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc81content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc81
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549631
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ATTTGTGAGGCGCTAC-1, ACTCCTCAGCGCAATT-1, GCAATGTTCGCTAGCA-1, GATCAGGCAATCGCAC-1, GAACACAAGCCGCTAA-1 (top 5 of 643055 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

not computed

Files

Filename Size md5
GSM8549631_hc81_atac_fragments.tsv.gz 2.96 GB 39321508f803b6b18fa144ad779deccc
GSM8549631_hc81_atac_fragments.tsv.gz.tbi 1.34 MB 242f762f52d739294bafad51b51dbb70
GSM8549631_hc81_atac_fragments.tsv.gz.tbi.gz 1.33 MB 62c0d6ec133b048065e8cb18f9e46c84
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 0c9c97c454f923b9c5b4dacffc049cf1
statistics/