Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc9content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549654
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGCTAATAGAATGACG-1, CATGCAAGTACCAGGT-1, GCACGAACAAACCTAT-1, GCTGACCAGCAGGCCT-1, ACATTGCAGGGATGAC-1 (top 5 of 543078 values)
count int

count
HISTOGRAM FOR count [1, 29]

Fragments

not computed

Files

Filename Size md5
GSM8549654_hc9_atac_fragments.tsv.gz 1.44 GB 63bdca49b740f497d3d1ac9f9f9a2f5a
GSM8549654_hc9_atac_fragments.tsv.gz.tbi 907.06 KB c0e078bc5e4d6232779908c59000365e
GSM8549654_hc9_atac_fragments.tsv.gz.tbi.gz 905.71 KB ce4b30ddc04b42f252729ea0c0970440
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.32 KB 12e93ad6842809fe46d35414976f9514
statistics/