Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc935content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc935
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549623
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell ACCTGGTCATGTTGCA-1, GCATCCTTCTGTAAGC-1, TCGATTAAGTGAGCAA-1, CTGTATTTCTTGCAGG-1, ACTTTGTTCCGCCTCA-1 (top 5 of 618302 values)
count int

count
HISTOGRAM FOR count [1, 42]

Fragments

not computed

Files

Filename Size md5
GSM8549623_hc935_atac_fragments.tsv.gz 2.33 GB 2f6c48098c95c51bbbdd17ad74a82797
GSM8549623_hc935_atac_fragments.tsv.gz.tbi 1.13 MB 39c76c06cb70238b513149002729d999
GSM8549623_hc935_atac_fragments.tsv.gz.tbi.gz 1.12 MB f18c7e8b3ffa668e69a047a44169a774
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB 3f6c0e4c6b27f75fb9ecc612a695b6b1
statistics/