Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc937content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc937
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549624
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TGTTGGCCATAGGCGA-1, GTTTGTTTCTCACATT-1, ACTATCCGTACCGGAT-1, TATTGACCAGTAGCCT-1, AGAAAGGCACTGGCCA-1 (top 5 of 648255 values)
count int

count
HISTOGRAM FOR count [1, 27]

Fragments

not computed

Files

Filename Size md5
GSM8549624_hc937_atac_fragments.tsv.gz 2.4 GB e49855bfff41937870080fbf723aa020
GSM8549624_hc937_atac_fragments.tsv.gz.tbi 1.17 MB 1741e0f126d620bf2efddd522ea119b1
GSM8549624_hc937_atac_fragments.tsv.gz.tbi.gz 1.17 MB 5d66b0fdf90f5d11ba4d454aadd6bc89
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB e48fbd689196fe530e7cbdabca2a6ded
statistics/