Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc98content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc98
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549645
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell GATCAGGCAGGCCAAA-1, TCAAGAACAGTTAGCC-1, GATCAGTTCCGTAAAC-1, TAATGCATCCTAAATG-1, GTAGGCGAGGGTCTAT-1 (top 5 of 647766 values)
count int

count
HISTOGRAM FOR count [1, 22]

Fragments

not computed

Files

Filename Size md5
GSM8549645_hc98_atac_fragments.tsv.gz 3.11 GB 5e68e921407455e206a4efa5f4ae2f04
GSM8549645_hc98_atac_fragments.tsv.gz.tbi 1.29 MB a57e16c77e1657798a64dd6729de2dff
GSM8549645_hc98_atac_fragments.tsv.gz.tbi.gz 1.29 MB 1e7bd551c321575809c6629724a46b7f
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB e8d5b5bad26a7af4e355eb37f3774e02
statistics/