Resource

Id summary/johansen2025Crossspecies/atac_fragments/human/abcc10d49a1c92085f56c60edc0af520d9a31fe9content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: basal ganglia
  • data_types: fragments
  • dataset: johansen2025Crossspecies
  • library: abcc10d49a1c92085f56c60edc0af520d9a31fe9
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCACATAAGGGCCATC-2495_B08, TTAGCAATCAAACCTA-2495_B08, CGTTTCTCATCGTTCT-2495_B08, TGAGTGAAGCCTAATA-2495_B08, AAAGGCTCAGTTTCTC-2495_B08 (top 5 of 5082 values)
count int

count
HISTOGRAM FOR count [1, 1]

Fragments

not computed

Files

Filename Size md5
abcc10d49a1c92085f56c60edc0af520d9a31fe9.gz 2.14 GB 78be2167ed12b94bd861dee77319eceb
abcc10d49a1c92085f56c60edc0af520d9a31fe9.gz.tbi 1.07 MB cd48e6df55241aeebf6919b94bfd32cb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.39 KB 38f6672b6e582c7f37e43178c4b7d4cf
statistics/