Resource

Id summary/zemke2023Conserved/atac_fragments/4B_rep1_deepcontent_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • age: P56
  • assay: 10x_Multiome
  • brain_region: mop
  • data_types: fragments
  • dataset: zemke2023Conserved
  • donor_id: Mop_4B
  • modalities: ATAC
  • neun_enriched: no
  • processing_level: aligned
  • reference_genome: reference/Mouse/genome/GRCm39
  • resolution: single_nucleus
  • sample_id: Mop_4B_rep1
  • sequencing_platform: Illumina
  • sex: M
  • species: mouse
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell CGTTGCAAGTATTGGC-1, CAGGACCTCCCTTGCG-1, TAGTACGGTGGGAACA-1, AGTGAGTCAGTAGCCT-1, GCCAGGAAGCTGGACC-1 (top 5 of 567549 values)
count int

count
HISTOGRAM FOR count [1, 21]

Fragments

Chromosome Fragments
all chromosomes 214440765
chr1 15158728
chr2 16801562
chr3 10962823
chr4 13701537
chr5 14020329
chr6 12023954
chr7 12798747
chr8 11502751
chr9 12000952
chr10 10725837
chr11 14040705
chr12 9571455
chr13 9383319
chr14 8958615
chr15 9480933
chr16 7657762
chr17 8725838
chr18 7227519
chr19 5763862
chrX 3773868
chrY 65733
GL456210.1 1869
GL456211.1 3133
GL456212.1 2266
GL456216.1 15689
GL456219.1 1
GL456221.1 2014
GL456233.1 5490
GL456350.1 9
GL456354.1 117
JH584292.1 293
JH584293.1 1
JH584294.1 7
JH584295.1 1838
JH584296.1 34
JH584297.1 81
JH584299.1 1349
JH584303.1 1
JH584304.1 59744

Fragment lengths

global fragment-length histogram

Files

Filename Size md5
4DNFI4AGCNE4.tsv.gz 2.16 GB 30223a9877f236d376b95e47b8d6662e
4DNFI4AGCNE4.tsv.gz.tbi 1006.58 KB 05f3f75687f6d437ae0eae6e63fd64eb
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.4 KB f609d378bea9f485e05c62bf023a0e9b
statistics/