Resource

Id summary/zemke2024Epigenetic/atac_fragments/hc46426content_copy
Type fragment_score
Version 0
Summary
Description
Labels
  • assay: 10x_Multiome
  • brain_region: hippocampus
  • data_types: fragments
  • dataset: zemke2024Epigenetic
  • individual_id: hc46426
  • modalities: ATAC
  • processing_level: aligned
  • reference_genome: reference/Human/genome/ucsc-hg38
  • resolution: single_nucleus
  • run_id: GSM8549637
  • sequencing_platform: Illumina
  • species: human
  • vendor: 10x_Genomics

Scores (2)

ID Type Default annotation Description Histogram Range
cell str

cell
HISTOGRAM FOR cell TCGTGCTTCGCAGGCT-1, GCCTTAGAGGGTGAAC-1, GATGGCTGTGCTAGCG-1, AGGACTAAGCGAGGTG-1, ATCGGCCAGTGGCGGA-1 (top 5 of 681941 values)
count int

count
HISTOGRAM FOR count [1, 29]

Fragments

not computed

Files

Filename Size md5
GSM8549637_hc46426_atac_fragments.tsv.gz 2.4 GB e464d418c7c09d4bb4925ee4e2045c83
GSM8549637_hc46426_atac_fragments.tsv.gz.tbi 1.11 MB 1ce0de83334b1746466dd600c3b90c12
GSM8549637_hc46426_atac_fragments.tsv.gz.tbi.gz 1.11 MB ab0a090ca696be75da4bb457a225afdc
fragment_count_dist_plot.py 853.0 B 9d735ee8c687286d50484e7f1e398e60
genomic_resource.yaml 1.33 KB f9441a1064278e183afdab49371320af
statistics/